Plugins Section

In this section we overview CC3DML syntax for all the plugins available in CompuCell3D. Plugins are either energy functions, lattice monitors or store user assigned data that CompuCell3D uses internally to configure simulation before it is run.

• CellType Plugin
• Global Volume and Surface Constraints
• VolumeTracker and SurfaceTracker plugins
• VolumeFlex Plugin
• SurfaceFlex Plugin
• VolumeLocalFlex Plugin
• SurfaceLocalFlex Plugin
• NeighborTracker Plugin
• Chemotaxis
• ExternalPotential Plugin
• CenterOfMass Plugin
• Contact Plugin
• What Does Energy Mean?
• Calculating Contact Energy
• AdhesionFlex Plugin
• Compartmentalized Cells | ContactInternal Plugin
• LengthConstraint Plugin
• Connectivity Plugins
• Secretion / SecretionLocalFlex Plugin
• PDESolverCaller Plugin
• FocalPointPlasticity Plugin
• Working on the Basis of Links
• Curvature Plugin
• BoundaryPixelTracker Plugin
• GlobalBoundaryPixelTracker Plugin
• PixelTracker Plugin
• MomentOfInertia Plugin
• ConvergentExtension plugin